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What is wrong with the suffix array approach

I was solving this question but sometimes it gives me wrong answer. What is wrong with my approach?

I used suffix array and lcp array.

We know that any prefix of a suffix is a substring of the string itself, so after finding the suffix array and the lcp array I did the following:

I choose two suffixes say i & j, suppose suffix i smaller than j.

Their lcp(i, j) will tell me the number of chars in common until I hit a mismatch or the suffix ends.

if the suffix ends then we r done the number of accepted pairs is the lcp itself. otherwise if the mismatch doesn’t exceed k then we add lcp(i, j) + 1 to the result, then I start again with new suffixes.

I’ll give an example to make it more clear:

suffix i: abcdef suffix j: abceeeefff suppose k is 1

lcp(i, j) = 3 & the first mismatch is d & e. this mismatch doesn’t exceed k so res += (3 + 1) then new suffixes are:

suffix i: ef suffix j: eeefff

Notice how I removed the lcp and the mismatch.

now lcp(i, j) = 1 & mismatch is f & e but the mismatch will now exceed k so we just count lcp thus res += 1 which yields res = 5

Here is a function that finds solution for i & j;

LL solve(int i, int j, int n, int k) {

int x = n - pos[i]; // Length of suffix i

int y = n - pos[j]; // Length of suffix j

// Put shorter suffix in x and longer in y if(x > y) swap(x, y), swap(i, j); LL ret = 0, m = 0;

while(x > 0) { ret += lcp1[i][j];

// if all suffix i is a match break otherwise we have a mismatch
if(x == lcp1[i][j]) break;

// if this mismatch excceeds k then break otherwise count it
if((m + 1) > k) break;


// remove the matched chars and mismatched char
x -= (lcp1[i][j] + 1); 
y -= (lcp1[i][j] + 1);

// update the position of the new suffixes in the suffix array.
// rank returns the position of suffix starting at position pos[i] + lcp1[i][j] + 1 in //the suffix array
i = rank[pos[i] + lcp1[i][j] + 1];
j = rank[pos[j] + lcp1[i][j] + 1];


return ret + m; // return matches + mismatches


asked 16 Aug '13, 16:25

bondoc73's gravatar image

accept rate: 10%

Use DP for this one. Much easier to implement.


answered 16 Aug '13, 21:24

arnabbcs08's gravatar image

accept rate: 0%

edited 16 Aug '13, 21:26

can you tell me where is the mistake in this solution?

(17 Aug '13, 01:10) bondoc734★
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question asked: 16 Aug '13, 16:25

question was seen: 1,349 times

last updated: 17 Aug '13, 03:47